Okumus B, Pedraza J, Bakshi S, Pedraza J. (2023)
Editorial: Next-generation quantitative and synthetic biology: High-sensitivity, high-accuracy, and digital approaches
Frontiers in Bioengineering and Biotechnology (ISSN 2296-4185)
Article
Juan Manuel Pedraza Leal
Juan Manuel Pedraza Leal
jmpedraza @uniandes.edu.co
Profesor Asociado
Office: IP-404
Extension: 5179
Departamento de Física
Profile
Recent Courses
- 2023
PROYECTO FINAL
First period
Bachelor Level
FÍSICA BÁSICA 1
First period
Bachelor Level
Recent Products
Escobar M, Castillo A, Guevara-Suarez M, Sarmiento OL, Medaglia A, Forero-Shelton Manu, Velasco M, Pedraza J, Laajaj R, Restrepo S, Arbelaez P. (2022)
Smart pooling: AI-powered COVID-19 informative group testing
SCIENTIFIC REPORTS (ISSN 2045-2322)
Article
Recent Projects
- 2011
- STOCHASTICITY AND GROWTH EFFECTS ON BACTERIAL PERSISTENCE
Duration: 36 months
PR.3.2011.1513.jmpedraza
Courses
- 2023
PROYECTO FINAL
First period
Bachelor Level
FÍSICA BÁSICA 1
First period
Bachelor Level
FÍSICA BÁSICA 1
Second period
Bachelor Level
BIOLOGIA DE SISTEMAS
Second period
Bachelor Level
BIOLOGÍA DE SISTEMAS
Second period
Master Level
PROYECTO TEORICO COMPUTACIONAL
Second period
Bachelor Level
PROYECTO EXPERIMENTAL
Second period
Bachelor Level
PROYECTO FINAL
Second period
Bachelor Level
- 2022
- 2021
- 2020
- 2019
- 2018
- 2017
- 2016
- 2015
- 2014
- 2013
Products
Okumus B, Pedraza J, Bakshi S, Pedraza J. (2023)
Editorial: Next-generation quantitative and synthetic biology: High-sensitivity, high-accuracy, and digital approaches
Frontiers in Bioengineering and Biotechnology (ISSN 2296-4185)
Article
Escobar M, Castillo A, Guevara-Suarez M, Sarmiento OL, Medaglia A, Forero-Shelton Manu, Velasco M, Pedraza J, Laajaj R, Restrepo S, Arbelaez P. (2022)
Smart pooling: AI-powered COVID-19 informative group testing
SCIENTIFIC REPORTS (ISSN 2045-2322)
Article
Nieto C, Vargas C, Pedraza J. (2021)
Continuous rate modeling of bacterial stochastic size dynamics
Physical Review E (ISSN 2470-0045)
Article
Duran D, Hernandez C.A., Suesca E, Acevedo R, Acosta I, Forero D, Rozo F, Pedraza J. (2021)
Slipstreaming mother machine: A microfluidic device for single-cell dynamic imaging of yeast
Micromachines (ISSN 2072-666X)
Article
Betancourt PL, Guevara-Suarez M, Hidalgo M, Restrepo S, Potdevin E, Huertas J, Medaglia A, Pedraza J, Cepeda M, Arbelaez P. (2020)
El papel de la ingeniería en la pandemia de COVID-19
Revista de Ingeniería: Universidad de los Andes (ISSN 2011-0049)
Article
Nieto C, Arias J, Vargas C, Sanchez C, Pedraza J. (2020)
Correlation between protein concentration and bacterial cell size can reveal mechanisms of gene expression
Physical Biology (ISSN 14783967)
Article
Nieto C, Vargas C, Singh A, Pedraza J. (2020)
Division stochasticity can be transmitted to protein expression through chromosome replication
IFAC-PapersOnLine ()
Article
Nieto C, Pedraza J. (2019)
Dissecting cell-size control strategies through stochastic processes
2019 IEEE 4th Colombian Conference on Automatic Control (CCAC) (ISBN 978-1-5386-6962-4)
Inproceeding
Moran R .(2016). Estadísticas y Ruido Intrínseco de la Expresión Genética.
Estadísticas y Ruido Intrínseco de la Expresión Genética
Thesis
Sanchez C .(2016). FITNESS MAXIMIZATION UNDER CONTROLLED ENVIRONMENTAL UNCERTAINTY.
FITNESS MAXIMIZATION UNDER CONTROLLED ENVIRONMENTAL UNCERTAINTY
Thesis
Pedraza J.
International workshop: “Stochastic processes with applications in the natural sciences”
Event
Estupiñan J .(2016). Respuesta en fitness a cambios de un medio ambiente oscilante en el sistema GAL de Saccharomyces cerevisiae.
Respuesta en fitness a cambios de un medio ambiente oscilante en el sistema GAL de Saccharomyces cerevisiae
Thesis
Linares J .(2016). Soluciones analíticas a sistemas de expresión de genes con feedback negativo.
Soluciones analíticas a sistemas de expresión de genes con feedback negativo
Thesis
Quiroga V .(2016). Stochastic Models on Persistence.
Stochastic Models on Persistence
Thesis
Gutierrez L .(2016). Stochastic models of genetic circuits.
Stochastic models of genetic circuits
Thesis
Vanegas M .(2015). Regulating lead bioremediation-related genes through a construct design.
Regulating lead bioremediation-related genes through a construct design
Thesis
Otero A .(2015). Sistema de interacción entre fenotipos cooperantes y desertores utilizando Saccharomyces cerevisiae.
Sistema de interacción entre fenotipos cooperantes y desertores utilizando Saccharomyces cerevisiae
Thesis
Karr J, Williams A, Zucker J, Raue A, Steiert B, Timmer J, Kreutz C, Wilkinson S, Allgood B, Bot B, Hoff B, Kellen M, Covert M, Stolovitzky G, Meyer P, Hu Y, Baron M, Bryson K, Barker B, Bogart E, Wang Y, Chandramohan D, Huang L, Zawack K, Shestov A, Makadia H, Decicco D, Yin A, Wang M, Li S, Swistak M, Cygan M, Kazakiewicz D, Kursa M, Korytkowski P, Plewczynski D, Yang J, Li Y, Tang H, Wang T, Liu Y, Xie Y, Xiao G, Bello J, Botero D, Cañas S, Castro J, Gomez F, Valdes I, Gonzalez L, Bernal A, Pedraza J, Restrepo S, Reyes A. (2015)
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models
PLoS Computational Biology (ISSN 1553-734X)
Article
Contreras L .(2015). THE PHENOMENON OF PERSISTENCE IN ESCHERICHIA COLI IN RESPONSE TO THERMAL SHOCK.
THE PHENOMENON OF PERSISTENCE IN ESCHERICHIA COLI IN RESPONSE TO THERMAL SHOCK
Thesis
Perez M .(2014). Gene Expression and Directed Information.
Gene Expression and Directed Information
Thesis
Cañas S, Restrepo S, Pedraza J. (2014)
Novel Protocol for Persister Cells Isolation
PLoS ONE (ISSN 1932-6203)
Article
Restrepo J .(2014). OPTIMIZACION DE RESPUESTAS BIOLOGICAS EN LA TRANSCRIPCION DE GENES.
OPTIMIZACION DE RESPUESTAS BIOLOGICAS EN LA TRANSCRIPCION DE GENES
Thesis
Barajas A .(2013). Analisis de las caractersticas dispersivas de medios heterogeneos a partir de la coherencia.
Analisis de las caractersticas dispersivas de medios heterogeneos a partir de la coherencia
Thesis
Ortega O .(2013). Analysis of the evolution of human cooperation using evolutionary game theory.
Analysis of the evolution of human cooperation using evolutionary game theory
Thesis
Toprak E, Veres A, Yildiz S, Pedraza J, Chait R, Paulsson J, Kishony R. (2013)
Building a morbidostat: An automated continuous-culture device for studying bacterial drug resistance under dynamically sustained drug inhibition
Nature Protocols (ISSN 1754-2189)
Article
Cañas S .(2013). Novel protocol for persister cells isolation & Genomic and transcriptomic analysis of E. coli DS1 (hipQ): A model for type II persistence..
Novel protocol for persister cells isolation & Genomic and transcriptomic analysis of E. coli DS1 (hipQ): A model for type II persistence.
Thesis
Regino L .(2013). Random switching as an adaptive strategy in changing environments.
Random switching as an adaptive strategy in changing environments
Thesis
Cañas S, Restrepo S, Pedraza J.
Synthetic biology approach for bacterial GMOs population control; Bacterial “Alarm Clock” based on Toxin-Antitoxin (TA) stimuli-dependent differential induction
Event
Leidy C, Pedraza J. (2013)
Tuning the range and stability of multiple phenotypic states with coupled positive-negative feedback loops
Nature Communications (ISSN 2041-1723)
Article
Mahecha L .(2012). Effects of Gene Expression Noise on Phenotype and cooperate-defect Fitness.
Effects of Gene Expression Noise on Phenotype and cooperate-defect Fitness
Thesis
Pedraza J, Paulsson J. (2008)
Effects of molecular memory and bursting on fluctuations in gene expression
Science (ISSN 0036-8075)
Article
Pedraza J, Paulsson J. (2007)
Random timing in signaling cascades
Molecular Systems Biology (ISSN 1744-4292)
Article
Chabot J, Pedraza J, Luitel P, Van A. (2007)
Stochastic gene expression out-of-steady-state in the cyanobacterial circadian clock
Nature (ISSN 0028-0836)
Article
Pedraza J. (2006)
Noise in gene regulatory networks
Complex Systems Science In Biomedicine (ISBN 978-0-387-30241-6)
Inbook
Mettetal J, Muzzey D, Pedraza J, Ozbudak E, Van A. (2006)
Predicting stochastic gene expression dynamics in single cells
Proceedings of the National Academy of Sciences of the United States of America (ISSN 0027-8424)
Article
Pedraza J. (2005)
Noise propagation in gene networks
Science (ISSN 0036-8075)
Article
Binder P, Pedraza J. (2000)
Nonregular languages in the kicked rotor
Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics (ISSN 1063-651X)
Article
Binder P, Pedraza J, Garzón C. (1999)
An invertibility paradox
American Journal of Physics (ISSN 0002-9505)
Article
Projects
- 2011
- STOCHASTICITY AND GROWTH EFFECTS ON BACTERIAL PERSISTENCE
Duration: 36 months
PR.3.2011.1513.jmpedraza